How to find studies and lead variants assigned by V2G
This example illustrates how you can find all studies from the GWAS Catalog or UK Biobank e.g. GCST008413 and NEALE2_1687, plus all lead variants assigned to your gene of interest (ENSG00000158158) as a result of the V2G pipeline.
Use the studiesAndLeadVariantsForGenequery:
{studiesAndLeadVariantsForGene(geneId: "ENSG00000158158") {indexVariant {idrsId}study {studyIdtraitReported}}}
Response
{"data": {"studiesAndLeadVariantsForGene": [{"indexVariant": {"id": "2_96663115_C_T","rsId": "rs17634791"},"study": {"studyId": "NEALE2_30180_raw","traitReported": "Lymphocyte percentage"}},{"indexVariant": {"id": "2_96506388_G_A","rsId": "rs1866444"},"study": {"studyId": "GCST008413","traitReported": "Core binding factor acute myeloid leukemia"}},{"indexVariant": {"id": "2_96535945_G_A","rsId": "rs2579500"},"study": {"studyId": "NEALE2_30210_raw","traitReported": "Eosinophill percentage"}},{"indexVariant": {"id": "2_96535945_G_A","rsId": "rs2579500"},"study": {"studyId": "GCST004606","traitReported": "Eosinophil counts"}},{"indexVariant": {"id": "2_96297946_A_G","rsId": "rs772178"},"study": {"studyId": "GCST006258","traitReported": "Diastolic blood pressure"}},{"indexVariant": {"id": "2_96388214_TTAGA_T","rsId": "rs35205062"},"study": {"studyId": "NEALE2_30150","traitReported": "Eosinophill count"}},{"indexVariant": {"id": "2_96189503_G_A","rsId": "rs4907230"},"study": {"studyId": "NEALE2_30190_raw","traitReported": "Monocyte percentage"}},{"indexVariant": {"id": "2_96535945_G_A","rsId": "rs2579500"},"study": {"studyId": "GCST007065","traitReported": "Eosinophil counts"}},{"indexVariant": {"id": "2_96535945_G_A","rsId": "rs2579500"},"study": {"studyId": "GCST004624","traitReported": "Sum eosinophil basophil counts"}},{"indexVariant": {"id": "2_96510897_C_T","rsId": "rs2579503"},"study": {"studyId": "GCST007269","traitReported": "Pulse pressure"}},{"indexVariant": {"id": "2_96535945_G_A","rsId": "rs2579500"},"study": {"studyId": "GCST004600","traitReported": "Eosinophil percentage of white cells"}},{"indexVariant": {"id": "2_96381261_G_A","rsId": "rs1081707"},"study": {"studyId": "GCST007268","traitReported": "Diastolic blood pressure"}},{"indexVariant": {"id": "2_96564337_G_A","rsId": "rs2708977"},"study": {"studyId": "GCST004617","traitReported": "Eosinophil percentage of granulocytes"}},{"indexVariant": {"id": "2_96479597_T_TTG","rsId": "rs113359549"},"study": {"studyId": "GCST004606","traitReported": "Eosinophil counts"}},{"indexVariant": {"id": "2_96564337_G_A","rsId": "rs2708977"},"study": {"studyId": "GCST004623","traitReported": "Neutrophil percentage of granulocytes"}},{"indexVariant": {"id": "2_96502225_T_C","rsId": "rs2579505"},"study": {"studyId": "NEALE2_30150","traitReported": "Eosinophill count"}},{"indexVariant": {"id": "2_96116247_G_C","rsId": "rs3111873"},"study": {"studyId": "NEALE2_4079_raw","traitReported": "Diastolic blood pressure, automated reading"}},{"indexVariant": {"id": "2_95936694_T_C","rsId": null},"study": {"studyId": "GCST004617","traitReported": "Eosinophil percentage of granulocytes"}},{"indexVariant": {"id": "2_96009418_T_C","rsId": "rs2579519"},"study": {"studyId": "GCST004280","traitReported": "Diastolic blood pressure"}},{"indexVariant": {"id": "2_96093689_T_C","rsId": "rs2579547"},"study": {"studyId": "GCST004609","traitReported": "Monocyte percentage of white cells"}},{"indexVariant": {"id": "2_96377542_G_GT","rsId": "rs561539268"},"study": {"studyId": "NEALE2_1687","traitReported": "Comparative body size at age 10"}},{"indexVariant": {"id": "2_96259531_T_A","rsId": "rs4907307"},"study": {"studyId": "GCST006568","traitReported": "Highest math class taken (MTAG) [MTAG]"}},{"indexVariant": {"id": "2_96739703_G_A","rsId": "rs2271893"},"study": {"studyId": "GCST001358","traitReported": "Bipolar disorder"}},{"indexVariant": {"id": "2_96714492_T_G","rsId": "rs56361249"},"study": {"studyId": "GCST003962","traitReported": "Bipolar disorder"}},{"indexVariant": {"id": "2_96710670_A_AT","rsId": "rs57195239"},"study": {"studyId": "GCST008103","traitReported": "Bipolar disorder"}},{"indexVariant": {"id": "2_96739703_G_A","rsId": "rs2271893"},"study": {"studyId": "GCST006585_941","traitReported": "Blood protein levels [LMAN2L]"}},{"indexVariant": {"id": "2_96686103_A_G","rsId": "rs7599598"},"study": {"studyId": "GCST006193_3","traitReported": "Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test) [EA]"}},{"indexVariant": {"id": "2_96686103_A_G","rsId": "rs7599598"},"study": {"studyId": "GCST006166_6","traitReported": "Diastolic blood pressure x alcohol consumption interaction (2df test) [Asian, EA]"}},{"indexVariant": {"id": "2_96686103_A_G","rsId": "rs7599598"},"study": {"studyId": "GCST006190","traitReported": "Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)"}},{"indexVariant": {"id": "2_96686103_A_G","rsId": "rs7599598"},"study": {"studyId": "GCST006166_8","traitReported": "Diastolic blood pressure x alcohol consumption interaction (2df test) [EA]"}},{"indexVariant": {"id": "2_96686103_A_G","rsId": "rs7599598"},"study": {"studyId": "GCST006193","traitReported": "Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)"}},{"indexVariant": {"id": "2_96686103_A_G","rsId": "rs7599598"},"study": {"studyId": "GCST006190_3","traitReported": "Diastolic blood pressure x smoking status (ever vs never) interaction (2df test) [EA]"}},{"indexVariant": {"id": "2_96752905_T_G","rsId": "rs189255944"},"study": {"studyId": "NEALE2_20151_raw","traitReported": "Forced vital capacity (fvc), best measure"}},{"indexVariant": {"id": "2_96617939_T_C","rsId": "rs183743021"},"study": {"studyId": "NEALE2_20015_raw","traitReported": "Sitting height"}},{"indexVariant": {"id": "2_97716827_T_C","rsId": "rs11683207"},"study": {"studyId": "SAIGE_401_1","traitReported": "Essential hypertension"}},{"indexVariant": {"id": "2_97716827_T_C","rsId": "rs11683207"},"study": {"studyId": "SAIGE_401","traitReported": "Hypertension"}},{"indexVariant": {"id": "2_97131943_T_C","rsId": "rs13390019"},"study": {"studyId": "GCST008757","traitReported": "Alcohol consumption"}},{"indexVariant": {"id": "2_96941334_A_G","rsId": "rs6728642"},"study": {"studyId": "GCST005081","traitReported": "Bipolar disorder lithium response (continuous) or schizophrenia"}},{"indexVariant": {"id": "2_96062159_C_T","rsId": "rs17119859"},"study": {"studyId": "GCST004623","traitReported": "Neutrophil percentage of granulocytes"}},{"indexVariant": {"id": "2_95991827_A_G","rsId": "rs62155511"},"study": {"studyId": "GCST007269","traitReported": "Pulse pressure"}},{"indexVariant": {"id": "2_97658891_G_A","rsId": "rs11692435"},"study": {"studyId": "GCST007328","traitReported": "Alcohol consumption (drinks per week)"}},{"indexVariant": {"id": "2_97658891_G_A","rsId": "rs11692435"},"study": {"studyId": "GCST007474","traitReported": "Smoking initiation (ever regular vs never regular)"}},{"indexVariant": {"id": "2_97658891_G_A","rsId": "rs11692435"},"study": {"studyId": "GCST007992","traitReported": "Colorectal cancer"}},{"indexVariant": {"id": "2_97658891_G_A","rsId": "rs11692435"},"study": {"studyId": "GCST007039","traitReported": "Body mass index"}},{"indexVariant": {"id": "2_97658891_G_A","rsId": "rs11692435"},"study": {"studyId": "GCST007468","traitReported": "Smoking initiation (ever regular vs never regular) (MTAG)"}},{"indexVariant": {"id": "2_99329966_C_CA","rsId": "rs70940164"},"study": {"studyId": "NEALE2_23115_raw","traitReported": "Leg fat percentage (left)"}},{"indexVariant": {"id": "2_97658891_G_A","rsId": "rs11692435"},"study": {"studyId": "GCST007461","traitReported": "Alcohol consumption (drinks per week)"}},{"indexVariant": {"id": "2_97658891_G_A","rsId": "rs11692435"},"study": {"studyId": "GCST007472","traitReported": "Alcohol consumption (drinks per week) (MTAG)"}},{"indexVariant": {"id": "2_97658891_G_A","rsId": "rs11692435"},"study": {"studyId": "GCST008522","traitReported": "Bitter alcoholic beverage consumption"}},{"indexVariant": {"id": "2_96617939_T_C","rsId": "rs183743021"},"study": {"studyId": "NEALE2_3062_raw","traitReported": "Forced vital capacity (fvc)"}},{"indexVariant": {"id": "2_96617939_T_C","rsId": "rs183743021"},"study": {"studyId": "NEALE2_20153_raw","traitReported": "Forced expiratory volume in 1-second (fev1), predicted"}},{"indexVariant": {"id": "2_97973620_T_A","rsId": "rs905484"},"study": {"studyId": "NEALE2_30210_raw","traitReported": "Eosinophill percentage"}},{"indexVariant": {"id": "2_97718216_C_T","rsId": "rs11687510"},"study": {"studyId": "GCST008413","traitReported": "Core binding factor acute myeloid leukemia"}},{"indexVariant": {"id": "2_97740700_T_C","rsId": "rs4851462"},"study": {"studyId": "GCST006630","traitReported": "Diastolic blood pressure"}},{"indexVariant": {"id": "2_97774654_G_A","rsId": "rs10191483"},"study": {"studyId": "NEALE2_30200_raw","traitReported": "Neutrophill percentage"}},{"indexVariant": {"id": "2_97921970_A_G","rsId": "rs1578957"},"study": {"studyId": "GCST006287","traitReported": "Adolescent idiopathic scoliosis"}},{"indexVariant": {"id": "2_95848679_C_T","rsId": "rs13406335"},"study": {"studyId": "NEALE2_30210_raw","traitReported": "Eosinophill percentage"}},{"indexVariant": {"id": "2_97032743_A_C","rsId": "rs13005320"},"study": {"studyId": "NEALE2_30150","traitReported": "Eosinophill count"}},{"indexVariant": {"id": "2_94695807_T_A","rsId": "rs191977771"},"study": {"studyId": "NEALE2_50_raw","traitReported": "Standing height"}},{"indexVariant": {"id": "2_94717678_C_T","rsId": "rs114519920"},"study": {"studyId": "NEALE2_1697","traitReported": "Comparative height size at age 10"}},{"indexVariant": {"id": "2_96752905_T_G","rsId": "rs189255944"},"study": {"studyId": "NEALE2_50_raw","traitReported": "Standing height"}},{"indexVariant": {"id": "2_96835038_A_G","rsId": "rs78381888"},"study": {"studyId": "GCST006568","traitReported": "Highest math class taken (MTAG) [MTAG]"}},{"indexVariant": {"id": "2_96835038_A_G","rsId": "rs78381888"},"study": {"studyId": "GCST006573","traitReported": "Self-reported math ability"}},{"indexVariant": {"id": "2_96835038_A_G","rsId": "rs78381888"},"study": {"studyId": "GCST006569","traitReported": "Self-reported math ability (MTAG) [MTAG]"}},{"indexVariant": {"id": "2_96858148_G_A","rsId": "rs79460537"},"study": {"studyId": "GCST008839","traitReported": "Height"}},{"indexVariant": {"id": "2_96900314_C_T","rsId": "rs114707893"},"study": {"studyId": "NEALE2_1697","traitReported": "Comparative height size at age 10"}},{"indexVariant": {"id": "2_96916498_A_T","rsId": "rs13018621"},"study": {"studyId": "NEALE2_6138_1","traitReported": "College or university degree | qualifications"}},{"indexVariant": {"id": "2_96989603_A_G","rsId": "rs148947061"},"study": {"studyId": "NEALE2_5375_raw","traitReported": "Longest period of unenthusiasm / disinterest"}}]}}
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