Open Targets Genetics Documentation
genetics.opentargets.org
Search
⌃
K
Links
Introduction
Release notes
Change log
FAQs
Future Plans
Licence
Citation
Terms of Use
Our Approach
Overview
Assigning Variants to Disease (V2D)
Assigning Variants to Genes (V2G)
Prioritising causal genes at GWAS loci (L2G)
Colocalisation analysis
Data Sources
Genetic Variation
FinnGen
Molecular Traits
Others
How To Use Open Targets Genetics starting with
A Gene
A Study (Trait)
Multiple Studies
A Variant
Introducing the Locus Plot
Technical Pipeline
What Technologies Do We Use?
GitHub Repositories
Pipeline schematic overview
Meetings
ESHG Workshop 2019
ASHG Workshop 2018
Data access
Data Download
GraphQL API
Powered By
GitBook
Comment on page
Genetic Variation
Variant index
GnomAD v2.1
Disease-associated loci sources (V2D)
GWAS Catalog curated studies
GWAS Catalog summary statistics
Neale lab UK Biobank summary statistics
SAIGE UK Biobank summary statistics
FinnGen summary statistics
Haplotype reference samples
1000 Genomes Phase 3
- used for LD expansion
UK Biobank genotypes
- used for conditional analysis in top-loci detection, fine-mapping and colocalisation analyses (
approved application
).
Variant functional predictions
In silico
functional prediction
Variant-Effect Predictor (VEP)
: Most severe transcript consequence(s)
Our Approach - Previous
Data Sources
Next
FinnGen
Last modified
1yr ago