GitHub Repositories

Input data workflows

• ​https://github.com/opentargets/genetics-v2d-data: Variant to disease dataset workflows

• ​https://github.com/opentargets/genetics-v2g-data: Workflows to generate cis-regulatory datasets used for variant-to-gene (V2G) assignment

• ​https://github.com/opentargets/genetics-sumstat-data:

  Workflows for processing summary statistics file

Genetics methods

• ​https://github.com/opentargets/genetics-finemapping: Fine-mapping pipeline

• ​https://github.com/opentargets/genetics-colocalisation: Colocalisation pipeline

• ​https://github.com/opentargets/sumstat_harmoniser: Summary statistic harmoniser

Back-end

• ​https://github.com/opentargets/genetics-pipe: Extract, transform, load pipeline

• ​https://github.com/opentargets/genetics-backend: QC, spin VMs, load data into DBs, create LUTs

• ​https://github.com/opentargets/genetics-api: GraphQL API code

Front-end

• ​https://github.com/opentargets/genetics-app: web application code for Open Targets Genetics​

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