GitHub Repositories

Input data workflows
​https://github.com/opentargets/genetics-v2d-data: Variant to disease dataset workflows
​https://github.com/opentargets/genetics-v2g-data: Workflows to generate cis-regulatory datasets used for variant-to-gene (V2G) assignment
​https://github.com/opentargets/genetics-sumstat-data: 
Workflows for processing summary statistics file
Genetics methods
​https://github.com/opentargets/mendelian-randomisation: Mendelian Randomisation
​https://github.com/opentargets/genetics-l2g-scoring: L2G pipeline
​https://github.com/opentargets/genetics-finemapping: Fine-mapping pipeline
​https://github.com/opentargets/genetics-colocalisation: Colocalisation pipeline
​https://github.com/opentargets/sumstat_harmoniser: Summary statistic harmoniser
Back-end
​https://github.com/opentargets/genetics-pipe: Extract, transform, load pipeline
​https://github.com/opentargets/genetics-backend: QC, spin VMs, load data into DBs, create LUTs 
​https://github.com/opentargets/genetics-api: GraphQL API code
Front-end
​https://github.com/opentargets/genetics-app: web application code for Open Targets Genetics​
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Last modified 13d ago