Open Targets Genetics Documentation
  • Introduction
  • Release notes
  • Change log
  • FAQs
  • Future Plans
  • Licence
  • Citation
  • Terms of Use
  • Our Approach
    • Overview
    • Assigning Variants to Disease (V2D)
    • Assigning Variants to Genes (V2G)
    • Prioritising causal genes at GWAS loci (L2G)
    • Colocalisation analysis
    • Data Sources
      • Genetic Variation
        • FinnGen
      • Molecular Traits
        • Splice QTLs
      • Others
  • How To Use Open Targets Genetics starting with
    • A Gene
    • A Study (Trait)
    • Multiple Studies
    • A Variant
    • Introducing the Locus Plot
  • Technical Pipeline
    • What Technologies Do We Use?
    • GitHub Repositories
    • Pipeline schematic overview
  • Meetings
    • ESHG Workshop 2019
    • ASHG Workshop 2018
  • Data access
    • Data Download
    • GraphQL API
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  1. Technical Pipeline

GitHub Repositories

PreviousWhat Technologies Do We Use?NextPipeline schematic overview

Last updated 1 year ago

Input data workflows

  • : Variant to disease dataset workflows

  • : Workflows to generate cis-regulatory datasets used for variant-to-gene (V2G) assignment

  • :

    Workflows for processing summary statistics file

Genetics methods

  • : Mendelian Randomisation

  • : L2G pipeline

  • : Fine-mapping pipeline

  • : Colocalisation pipeline

  • : Summary statistic harmoniser

Back-end

  • : Extract, transform, load pipeline

  • : QC, spin VMs, load data into DBs, create LUTs

  • : GraphQL API code

Front-end

  • : web application code for

https://github.com/opentargets/genetics-v2d-data
https://github.com/opentargets/genetics-v2g-data
https://github.com/opentargets/genetics-sumstat-data
https://github.com/opentargets/mendelian-randomisation
https://github.com/opentargets/genetics-l2g-scoring
https://github.com/opentargets/genetics-finemapping
https://github.com/opentargets/genetics-colocalisation
https://github.com/opentargets/sumstat_harmoniser
https://github.com/opentargets/genetics-pipe
https://github.com/opentargets/genetics-backend
https://github.com/opentargets/genetics-api
https://github.com/opentargets/genetics-app
Open Targets Genetics