Open Targets Genetics Documentation
genetics.opentargets.org
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Introduction
Release notes
Change log
FAQs
Future Plans
Licence
Citation
Terms of Use
Our Approach
Overview
Assigning Variants to Disease (V2D)
Assigning Variants to Genes (V2G)
Prioritising causal genes at GWAS loci (L2G)
Colocalisation analysis
Data Sources
FinnGen
How To Use Open Targets Genetics starting with
A Gene
A Study (Trait)
Multiple Studies
A Variant
Introducing the Locus Plot
Technical Pipeline
What Technologies Do We Use?
GitHub Repositories
Pipeline schematic overview
Meetings
ESHG Workshop 2019
ASHG Workshop 2018
Data access
Data Download
GraphQL API
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GitBook
GitHub Repositories
Input data workflows
https://github.com/opentargets/genetics-v2d-data
: Variant to disease dataset workflows
https://github.com/opentargets/genetics-v2g-data
: Workflows to generate cis-regulatory datasets used for variant-to-gene (V2G) assignment
https://github.com/opentargets/genetics-sumstat-data
:
Workflows for processing summary statistics file
Genetics methods
https://github.com/opentargets/genetics-finemapping
: Fine-mapping pipeline
https://github.com/opentargets/genetics-colocalisation
: Colocalisation pipeline
https://github.com/opentargets/sumstat_harmoniser
: Summary statistic harmoniser
Back-end
https://github.com/opentargets/genetics-pipe
: Extract, transform, load pipeline
https://github.com/opentargets/genetics-backend
: QC, spin VMs, load data into DBs, create LUTs
https://github.com/opentargets/genetics-api
: GraphQL API code
Front-end
https://github.com/opentargets/genetics-app
: web application code for
Open Targets Genetics
Technical Pipeline - Previous
What Technologies Do We Use?
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Pipeline schematic overview
Last modified
3yr ago
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