GitHub Repositories

Input data workflows

• https://github.com/opentargets/genetics-v2d-data: Variant to disease dataset workflows

• https://github.com/opentargets/genetics-v2g-data: Workflows to generate cis-regulatory datasets used for variant-to-gene (V2G) assignment

• https://github.com/opentargets/genetics-sumstat-data:

  Workflows for processing summary statistics file

Genetics methods

• https://github.com/opentargets/mendelian-randomisation: Mendelian Randomisation

• https://github.com/opentargets/genetics-l2g-scoring: L2G pipeline

• https://github.com/opentargets/genetics-finemapping: Fine-mapping pipeline

• https://github.com/opentargets/genetics-colocalisation: Colocalisation pipeline

• https://github.com/opentargets/sumstat_harmoniser: Summary statistic harmoniser

Back-end

• https://github.com/opentargets/genetics-pipe: Extract, transform, load pipeline

• https://github.com/opentargets/genetics-backend: QC, spin VMs, load data into DBs, create LUTs

• https://github.com/opentargets/genetics-api: GraphQL API code

Front-end

• https://github.com/opentargets/genetics-app: web application code for Open Targets Genetics